gmod_fasta2gff3.pl1p

Synopsys

  % $O [options]

Options

  --fasta_dir           Directory contain fasta files
                           (default: ./fasta)
  --gfffilename         Name of GFF3 file to be created
                           (default: ./out.gff)
  --type                SO type to assign to each feature
                           (default: EST)
  --source              Text to appear in source column
                           (default: .)
  --attributes          Additional tag=value pairs to appear in column 9
  --nosequence          Suppress the ##FASTA section (ie, don't
                           print DNA sequences)

Overview

This script simply takes a collection of fasta files and converts them to simple GFF3 suitable for loading into chado.