gm2segs1
Present genemachine blast aligments in tabular form
Usage
gm2segs [{-0-based | -zero-based | -1-based | -one-based | -ucsc-based}]
Overview
gm2segs reads BLAST alignments from GeneMachine from standard input and writes a sorted table of their hits' coordinates to standard output.
Options
|
Report closed intervals in zero-based coordinates. |
|---|---|
|
Report closed intervals in one-based coordinates (default). |
-
-ucsc-based -
Report half-open intervals in zero-based coordinates.