glistquery1
Print the frequencies of k-mers in a list file
Usage
glistquery <INPUTLIST>
[OPTIONS]
Options
-v, --version - print version information and exit
-h, --help - print this usage screen and exit
-stat - print statistics of the list file and exit
-median - print min/max/median/average and exit
-q, --query - single query word
-f, --queryfile - list of query words in a file
-s, --seqfile - FastA/FastQ file
-l, --listfile - list file made by glistmaker
-mm, --mismatch NUMBER - specify number of mismatches (default 0, can be used with -d and -dd)
-p, --perfectmatch NUMBER - specify number of 3' perfect matches (default 0)
-min, --minfreq NUMBER - minimum frequency of the printed words (default 0)
-max, --maxfreq NUMBER - maximum frequency of the printed words (default MAX_UINT)
-all - in case of mismatches prints all found words
-D - increase debug level
Examples
You could find some usage examples in /usr/share/doc/genometester/README.GenomeTester4.md
Releases
Unchanged in 4 releases since Debian 10 (Buster).