gffutils-cli-sanitize1
Sanitize a gff file
Overview
usage: gffutils-cli sanitize [-h] [--in-memory] [--in-place] filename
Sanitize a GFF file. Might get merged with clean feature later.
Cleans and adds useful annotations to a GFF file:
-
- Ensures that start > end in all entries - Adds an entry id (eid) to each entry to make files grep-able
Outputs result to stdout unless asked to sanitize in place.
positional arguments:
- filename
-
GFF or GTF file to use (or GFF database.)
options:
-
-h, --help -
show this help message and exit
-
--in-memory -
Load GFF into memory for processing. (default: True)
-
--in-place -
Sanitize file in-place: overwrites current file with sanitized version. (default: False)
Releases
3 releases since Debian 11 (Bullseye); the text changed 2 times.