getWithinGeneExpression1
Compute relative expression of transcripts within genes
Usage
getWithinGeneExpression -t
<trInfoFileName>
[OPTIONS]
[samplesFile]
Overview
Computes relative expression of transcripts within genes.
-
[samplesFile] should contain transposed MCMC expression samples. program can produce means and variance and write them into [sumFile] or individual MCMC samples which are written into [outFile].
Options
--help
-
Show this help information.
-a , --adjustByLength
-
Adjust expression by transcripts length. (default: Off)
-G <geneListFile> , --geneList=<geneListFile>
-
Name of the file containing list of gene names (one for each transcript).
--groupByGene
-
Group transcripts by genes (this can change the default order of output. (default: Off)
-l , --log
-
Use logged values. (default: Off)
-o <outFileName> , --outFile=<outFileName>
-
Name of the output file.
-s <sumFileName> , --sumFile=<sumFileName>
-
Name of summarization file where true mean, true variance and relative mean and relative variance are saved.
-t <trInfoFileName> , --trInfoFile=<trInfoFileName>
-
Name of the transcript file.
-T <trMapFile> , --trMap=<trMapFile>
-
Name of the file containing transcript to gene mapping.
--updateTrFile
-
Update trInfoFile if new gene names were provided (with trMapFile or geneListFile). (default: Off)
-v , --verbose
-
Verbose output. (default: Off)
Releases
4 releases since Debian 10 (Buster); the text changed 2 times.