garli-mpi1
Phylogenetic analysis of molecular sequence data using maximum-likelihood (mpi version)
Usage
mpirun [MPI
OPTIONS]
garli-mpi
-
[#
of
times
to
execute
config
file]
[config
filename]
Overview
GARLI, Genetic Algorithm for Rapid Likelihood Inference is a program for inferring phylogenetic trees. Using an approach similar to a classical genetic algorithm, it rapidly searches the space of evolutionary trees and model parameters to find the solution maximizing the likelihood score. It implements nucleotide, amino acid and codon-based models of sequence evolution, and runs on all platforms. The latest version adds support for partitioned models and morphology-like datatypes. This is the MPI version of Garli.
Options
-
-i, --interactive -
interactive mode (allow and/or expect user feedback)
-
-b, --batch -
batch mode (do not expect user input) (batch is the default for the version you are running)
-
-v, --version -
print version information and exit
-
-h, --help -
print this help and exit
-
-t -
run internal tests (requires dataset and config file)
-
-V -
validate: load config file and data, validate config file, data, starting trees and constraint files, print required memory and selected model, then exit
NOTE: If no config filename is passed on the command line the program will look in the current directory for a file named "garli.conf"
Releases
Unchanged in 4 releases since Debian 10 (Buster).