gapcleaner1
Find the most-parsimonious ordering of indels
Usage
gapcleaner <multi-FASTA
or
Stockholm
alignment>
Overview
gapcleaner from FSA 1.15.9
Find the most-parsimonious ordering of indels. Finds the minimal chain decomposition of the POSET of the alignment; this corresponds to minimizing the number of gap-openings across the sequences.
Input protein alignment must be in multi-FASTA or Stockholm format.
Releases
Unchanged in 5 releases since Debian 9 (Stretch).