fetch_refseq_bacterial_genomes_by_name1

Usage:

fetch_refseq_bacterial_genomes_by_name -n STRING -o DIR

Description:

Downloads a GenBank record using a partial or complete bacterial species name. The --min and --max options can be used to restrict the size of the returned sequences.

Required arguments:

-n, --name STRING

Complete or partial name of the bacterial species.

-m, --min INTEGER

Records with a sequence length shorter than this value will be ignored.

-x, --max INTEGER

Records with a sequence length longer than this value will be ignored.

-o, --output DIR

The output directory to download the GenBank file into.

Optional arguments:

-h, --help

Show this message.

Example:

fetch_refseq_bacterial_genomes_by_name -n 'Escherichia*' -o my_project/comparison_genomes