featureCounts(1) on Linux
The text be572f8bf5aa, as Debian 12 (Bookworm) shipped it.
toolkit for processing next-gen sequencing data
Flags it lists
-
--Rpath -
--byReadGroup -
--donotsort -
--extraAttributes -
--fraction -
--ignoreDup -
--largestOverlap -
--maxMOp -
--minOverlap -
--nonOverlap -
--nonSplitOnly -
--primary -
--read2pos -
--splitOnly -
--tmpDir -
--verbose -
-A -
-B -
-C -
-D -
-F -
-G -
-J -
-L -
-M -
-O -
-P -
-Q -
-R -
-T -
-a -
-d -
-f -
-g -
-o -
-p -
-t -
-v