fastx_trimmer1
Fasta/q trimmer
Overview
usage: fastx_trimmer [-h] [-f N] [-l N] [-t N] [-m MINLEN] [-z] [-v] [-i INFILE] [-o OUTFILE] Part of FASTX Toolkit 0.0.14 by A. Gordon ([email protected])
[-h]
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= This helpful help screen. |
|---|---|
[-f N]
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= First base to keep. Default is 1 (=first base). |
[-l N]
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= Last base to keep. Default is entire read. |
[-t N]
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= Trim N nucleotides from the end of the read. |
'-t'
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can not be used with '-l' and '-f'. |
[-m MINLEN]
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= With [-t], discard reads shorter than MINLEN. |
[-z]
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= Compress output with GZIP. |
[-i INFILE]
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= FASTA/Q input file. default is STDIN. |
|
[-o OUTFILE] = FASTA/Q output file. default is STDOUT. |
Releases
4 releases since Debian 7 (Wheezy); the text changed 3 times.