fastq-clipper1
Ea-utils: removes one or more adapter sequences from the fastq file
Overview
usage: fastq-clipper [options] <fastq-file> <adapters>
Removes one or more adapter sequences from the fastq file. Adapter sequences are colon-delimited. Stats go to stderr, unless -o is specified.
Options
-
-h -
This help
-
-o FIL -
Output file (stats to stdout)
-
-p N -
Maximum difference percentage (10)
-
-m N -
Minimum clip length (1)
-
-l N -
Minimum remaining sequence length (15)
-
-x [N] -
Extra match length past adapter length,
-
N =-1 : search all N = 0 : search only up to adapter length
-
-e -
End-of-line (default)
-
-b -
Beginning-of-line (not supported yet)
Releases
Unchanged in 5 releases since Debian 9 (Stretch).