fastaq_to_fasta1

Overview

fastaq_to_fasta <infile> <outfile>

Converts sequence file to FASTA format

positional arguments:

`infile`	Name of input file. Can be any of FASTA, FASTQ, GFF3, EMBL, GBK, Phylip
`outfile`	Name of output file

optional arguments:

-h, --help: show this help message and exit

-l LINE_LENGTH, --line_length LINE_LENGTH: Number of bases on each sequence line of output file [60]

-s, --strip_after_whitespace: Remove everything after first whitesapce in every sequence name

Copying

Wellcome Trust Sanger Institute Copyright © 2013 Wellcome Trust Sanger Institute This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 3 of the License, or (at your option) any later version.