fastaq_scaffolds_to_contigs1
Overview
fastaq_scaffolds_to_contigs [options] <infile> <outfile>
Creates a file of contigs from a file of scaffolds - i.e. breaks at every gap in the input
positional arguments:
infile
|
Name of input fasta/q file |
|---|---|
outfile
|
Name of output contigs file |
optional arguments:
-
-h, --help -
show this help message and exit
-
--number_contigs -
Use this to enumerate contig names 1,2,3,... within each scaffold
Copying
Wellcome Trust Sanger Institute Copyright © 2013 Wellcome Trust Sanger Institute This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 3 of the License, or (at your option) any later version.