fastaq_chunker1
Overview
fastaq_chunker [options] <fasta/q in> <prefix of output files> <chunk size> <tolerance>
Splits a multi fasta/q file into separate files. Splits sequences into chunks of a fixed size. Aims for chunk_size chunks in each file, but allows a little extra, so chunk can be up to (chunk_size + tolerance), to prevent tiny chunks made from the ends of sequences
positional arguments:
infile
|
Name of input fasta/q file to be split |
|---|---|
outprefix
|
Name of output fasta/q file |
chunk_size
|
Size of each chunk |
tolerance
|
Tolerance allowed in chunk size |
optional arguments:
-
-h, --help -
show this help message and exit
-
--skip_all_Ns -
Do not output any sequence that consists of all Ns
Copying
Wellcome Trust Sanger Institute Copyright © 2013 Wellcome Trust Sanger Institute This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 3 of the License, or (at your option) any later version.