fastaq_capillary_to_pairs1
Overview
fastaq_capillary_to_pairs <infile> <outfiles prefix>
Given a fasta/q file of capillary reads, makes an interleaved file of read pairs (where more than read from same ligation, takes the longest read) and a file of unpaired reads. Replaces the .p1k/.q1k part of read names to denote fwd/rev reads with /1 and /2
positional arguments:
infile
|
Name of input fasta/q file |
|---|---|
outfiles prefix
|
Prefix of output files |
optional arguments:
-
-h, --help -
show this help message and exit
Copying
Wellcome Trust Sanger Institute Copyright © 2013 Wellcome Trust Sanger Institute This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 3 of the License, or (at your option) any later version.