fastaq-to_random_subset1

Make a random sample of sequences (and optionally mates as well)

Overview

usage: fastaq_to_random_subset [options] <infile> <outfile> <percent>

Takes a random subset of reads from a sequence file and optionally the corresponding read from a mates file. Output is interleaved if mates file given

positional arguments:

`infile`	Name of input file
`outfile`	Name of output file
`FLOAT`	Per cent probability of keeping any given read (pair) in [0,100]

options:

-h, --help: show this help message and exit

--mate_file MATE_FILE: Name of mates file

--seed INT: Seed for random number generator. If not given, python's default is used

Releases

5 releases since Debian 9 (Stretch); the text changed 4 times.