fastaq-to_fasta1
Converts a variety of input formats to nicely formatted fasta format
Overview
usage: fastaq_to_fasta [options] <infile> <outfile>
Converts a variety of input formats to nicely formatted FASTA format
positional arguments:
infile
|
Name of input file. Can be any of FASTA, FASTQ, GFF3, EMBL, GBK, Phylip |
|---|---|
outfile
|
Name of output file |
options:
-
-h, --help -
show this help message and exit
-
-l LINE_LENGTH, --line_length LINE_LENGTH -
Number of bases on each sequence line of output file. Set to zero for no linebreaks in sequences [60]
-
-s, --strip_after_whitespace -
Remove everything after first whitespace in every sequence name
-
-u, --check_unique -
Die if any of the output sequence names are not unique
Releases
5 releases since Debian 9 (Stretch); the text changed 4 times.