fastaq-search_for_seq1
Find all exact matches to a string (and its reverse complement)
Overview
usage: fastaq_search_for_seq [options] <infile> <outfile> <search_string>
Searches for an exact match on a given string and its reverse complement, in every sequence of input sequence file. Case insensitive. Guaranteed to find all hits
positional arguments:
infile
|
Name of input file |
|---|---|
outfile
|
Name of outputfile. Tab-delimited output: sequence name, position, strand |
search_string
|
String to search for in the sequences |
options:
-
-h, --help -
show this help message and exit
Releases
5 releases since Debian 9 (Stretch); the text changed 4 times.