fastaq-chunker1
Splits sequences into equal sized chunks
Overview
usage: fastaq_chunker [options] <infile> <out> <chunk size> <tolerance>
Splits a multi sequence file into separate files. Splits sequences into chunks of a fixed size. Aims for chunk_size chunks in each file, but allows a little extra, so chunk can be up to (chunk_size + tolerance), to prevent tiny chunks made from the ends of sequences
positional arguments:
infile
|
Name of input file to be split |
|---|---|
out
|
Prefix of output file. If |
chunk_size
|
Size of each chunk |
tolerance
|
Tolerance allowed in chunk size |
options:
-
-h, --help -
show this help message and exit
-
--onefile -
Output all the sequences in one file
-
--skip_all_Ns -
Do not output any sequence that consists of all Ns
Releases
5 releases since Debian 9 (Stretch); the text changed 4 times.