fastaq-add_indels1
Deletes or inserts bases at given position(s)
Overview
usage: fastaq_add_indels [options] <infile> <outfile>
Deletes or inserts bases at given position(s)
positional arguments:
infile
|
Name of input file |
|---|---|
outfile
|
Name of output file |
options:
-
-h, --help -
show this help message and exit
-
-d Name:start:bases, --delete Name:start:bases -
Delete the given bases from the given sequence. Format same as samtools view: name:start-end. This option can be used multiple times (once for each region to delete). Overlapping coords will be merged before deleting
-
--delete_range P,start,step -
Deletes bases starting at position P in each sequence of the input file. Deletes start + (n-1)*step bases from sequence n.
-
-i Name:start:bases, --insert Name:start:bases -
Insert a random string of bases at the given position. Format is name:position:number_to_add. Bases are added after the position. This option can be used multiple times
-
--insert_range P,start,step -
Inserts random bases starting after position P in each sequence of the input file. Inserts start + (n-1)*step bases into sequence n.
Releases
5 releases since Debian 9 (Stretch); the text changed 4 times.