extractTranscriptInfo1
Extracts information about transcripts from reference fasta file
Usage
extractTranscriptInfo.py [options]
<inputFile>
<outputFile>
Overview
-
This program extracts information about transcripts from reference Fasta file. This is partially replaced by using SAM header, which however does not include information about transcript-gene grouping. Current version of parseAlignment extracts this information from a reference sequence file (making this script obsolete).
Options
-
-h, --help -
show this help message and exit
-
-v, --verbose -
Verbose output
-
-t TYPE, --type=TYPE -
Type of file to parse: ensembl, cuff, other
Releases
4 releases since Debian 10 (Buster); the text changed 2 times.