etandem1e
Finds tandem repeats in a nucleotide sequence
Usage
etandem -sequence
sequence
-minrepeat
integer
-maxrepeat
integer
-threshold
integer
-mismatch
boolean
-uniform
boolean
-outfile
report
-origfile
outfile
etandem -help
Overview
etandem is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”). It is part of the "Nucleic:Repeats" command group(s).
Options
Input section
-
-sequence sequence
Required section
-
-minrepeat integer -
Default value: 10
-
-maxrepeat integer -
Default value: $(minrepeat)
Advanced section
-
-threshold integer -
Default value: 20
-
-mismatch boolean
-
-uniform boolean
Output section
-
-outfile report
-
-origfile outfile
Releases
9 releases since Debian 5.0 (Lenny); the text changed 2 times.