esample(1)

esample1

Print a sample document for use with ncbi entrez direct

Usage

esample {-docsum | -article | -book | -protein | -gene | -taxon | -blast | -snp | -hgvs | -bioc | -flatfile | -gff | -gencode}

Overview

esample writes a sample document (typically NCBI Entrez XML) from the specified database to standard output.

Options

-docsum: Write an NCBI DocumentSummarySet XML document (PMID 6301692).

-article: Write an NCBI PubmedArticle XML document (PMID 6301692).

-book: Write an NCBI PubmedArticleSet XML document (PMID 21433338).

-protein: Write an NCBI INSDSeq XML document (accession AAQ05867.1).

-gene: Write an NCBI DocumentSummary XML document (gene IL9R).

-taxon: Write an NCBI TaxaSet XML document (for Homo sapiens).

-blast: Write an NCBI BlastOutput XML document (for blastx results).

-snp: Write an NCBI JSON document (for refsnp_id 1238141906).

-hgvs: Write a Human Genome Variation Society entry (for position 5,226,774 on NC_000011.10).

-bioc: Write a BioConductor collection XML document (for PMID 6301692).

-flatfile: Write a GenBank/GenPept flatfile (accessions U54469.1 and AAC03524.1).

-gff: Write a GFF3 record (for LGIB01000001.1).

-gencode: Summarize the standard genetic code and nucleotide and amino acid abbreviations, and list well-known genetic codes' numbers and names.

Releases

3 releases since Debian 11 (Bullseye); the text changed 2 times.

11
12
13

-gff since Debian 13 (Trixie); -hgvs since Debian 12 (Bookworm).

$ esample

Pick options to build a command. 13 options jk move x pick y copy / filter [] section