emma(1e) on Linux
The text 080e0cf22569, as Debian 5.0 (Lenny) shipped it.
Multiple alignment program - interface to ClustalW program
Flags it lists
-
-dend -
-dendfile -
-dendoutfile -
-dnamatrix -
-endgaps -
-gapdist -
-gapextend -
-gapopen -
-gapw -
-hgapres -
-ktup -
-mamatrixfile -
-matrix -
-maxdiv -
-nohgap -
-nopercent -
-norgap -
-onlydend -
-outseq -
-pairwisedatafile -
-pwdnamatrix -
-pwgapextend -
-pwgapopen -
-pwmatrix -
-sequence -
-slow -
-topdiags -
-umamatrix -
-usermamatrix -
-usermatrix -
-window