eiger2cbf1
Portable image converter based on fabio library to export eiger frames (including te one from lima) to cbf and mimic the header from dectris pilatus.
Overview
usage: eiger2cbf [-h] [-V] [-v] [--debug] [-o OUTPUT] [-m MASK] [-O OFFSET]
-
[-D DUMMY] [--pilatus] [--dry-run] [-e ENERGY] [-w WAVELENGTH] [-d DISTANCE] [-b BEAM BEAM] [--alpha ALPHA] [--kappa KAPPA] [--chi CHI] [--phi PHI] [--omega OMEGA] [--rotation ROTATION] [--transpose] [--flip-ud] [--flip-lr] [IMAGE ...]
Portable image converter based on FabIO library to export Eiger frames (including te one from LIMA) to CBF and mimic the header from Dectris Pilatus.
positional arguments:
- IMAGE
-
File with input images
options:
-
-h, --help -
show this help message and exit
-
-V, --version -
output version and exit
-
-v, --verbose -
show information for each conversions
-
--debug -
show debug information
main arguments:
-
-o OUTPUT, --output OUTPUT -
output directory and filename template: eiger2cbf/frame_{index:04d}.cbf
-
-m MASK, --mask MASK -
Read masked pixel from this file
-
-O OFFSET, --offset OFFSET -
index offset, CrysalisPro likes indexes to start at 1, Python starts at 0
-
-D DUMMY, --dummy DUMMY -
Set masked values to this dummy value
-
--pilatus -
Select an image shape similar to Pilatus detectors for compatibiliy with Crysalis
optional behaviour arguments:
-
--dry-run -
do everything except modifying the file system
Experimental setup options:
-
-e ENERGY, --energy ENERGY -
Energy of the incident beam in keV
-
-w WAVELENGTH, --wavelength WAVELENGTH -
Wavelength of the incident beam in ??
-
-d DISTANCE, --distance DISTANCE -
Detector distance in meters
-bBEAM BEAM,--beamBEAM BEAM-
Direct beam in pixels x, y
Goniometer setup:
-
--alpha ALPHA -
Goniometer angle alpha value in deg.
-
--kappa KAPPA -
Goniometer angle kappa value in deg.
-
--chi CHI -
Goniometer angle chi value in deg. or formula f(index)
-
--phi PHI -
Goniometer angle phi value in deg. or formula f(index)
-
--omega OMEGA -
Goniometer angle omega value in deg. or formula f(index) like '-180+index*0.1
Image preprocessing (Important: applied in this order!):
-
--rotation ROTATION -
Rotate the initial image by this value in degrees. Must be a multiple of 90??.
-
--transpose -
Flip the x/y axis
-
--flip-ud -
Flip the image upside-down
-
--flip-lr -
Flip the image left-right
return codes: 0 means a success. 1 means the conversion contains a failure, 2 means there was an error in the arguments
Releases
2 releases since Debian 11 (Bullseye); the text changed 1 time.
--mask since Debian 12 (Bookworm);
--pilatus since Debian 12 (Bookworm);
-m since Debian 12 (Bookworm).