edialign(1e) on Linux
The text 4a11c83cd8d8, as Debian 6.0 (Squeeze) shipped it.
Local multiple alignment of sequences
Flags it lists
-
-dostars -
-fragmat -
-fragsim -
-itscore -
-linkage -
-mask -
-maxfragl -
-nucmode -
-outfile -
-outseq -
-overlapw -
-revcomp -
-sequences -
-starnum -
-threshold