dindel(1) on Linux
The text 4d5af3440961, as Debian 10 (Buster), Debian 9 (Stretch) shipped it. The page shows this text now.
finds of insertions and deletions from short nucleotide sequences
Flags it lists
-
--bamFile -
--bamFiles -
--changeINStoN -
--compareReadHap -
--doDiploid -
--doPooled -
--faster -
--filterHaplotypes -
--filterReadAux -
--libFile -
--opl -
--outputFile -
--outputRealignedBAM -
--quiet -
--ref -
--region -
--showCandHap -
--showEmpirical -
--showHapAlignments -
--showReads -
--tid -
--varFile -
--varFileIsOneBased