demoalign1e
Reads a sequence set, writes an alignment file
Usage
demoalign -sequence
seqset
[-floatmatrix
matrixf]
[-intmatrix
matrix]
-dofloat
boolean
-outfile
align
demoalign -help
Overview
demoalign is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”). It is part of the "Test" command group(s).
Options
Input section
-
-sequence seqset
-
-floatmatrix matrixf -
This is the scoring matrix file used when comparing sequences. By default it is the file ´EBLOSUM62´ (for proteins) or the file ´EDNAFULL´ (for nucleic sequences). These files are found in the ´data´ directory of the EMBOSS installation.
-
-intmatrix matrix -
This is the scoring matrix file used when comparing sequences. By default it is the file ´EBLOSUM62´ (for proteins) or the file ´EDNAFULL´ (for nucleic sequences). These files are found in the ´data´ directory of the EMBOSS installation.
Advanced section
-
-dofloat boolean
Output section
-
-outfile align
Releases
2 releases since Debian 5.0 (Lenny); the text changed 1 time.