debruijn(1)

debruijn1

De bruijn sequence generator

Usage

debruijn [-] -a str -n k

Overview

debruijn generates (on standard output) a string over the specified alphabet containing every possible word (substring) of the specified length exactly once. Note: Substrings are not taken to wrap around, so the first k-1 characters repeat at the end.

Options

A summary of options is included below.

-

Print usage message.

-a str

Alphabet (supply ncbistdaa or ncbi2na for standard alphabets, or supply your own alphabet).

-n k

Word size.

Releases

Unchanged in 11 releases since Debian 3.1 (Sarge).

  1. 3.1–13

Author

The National Center for Biotechnology Information.

From ncbi-tools-bin 6.1.20170106+dfsg2-6 in Debian 13 (Trixie). Parsed by carta from the page's man source.