cuteSV(1) on Linux
The text ff4adf17203a, as Debian 12 (Bookworm) shipped it.
prediction of structural variants from sequence alignments
Flags it lists
-
--batches -
--diff_ratio_filtering_TRA -
--diff_ratio_merging_DEL -
--diff_ratio_merging_INS -
--genotype -
--gt_round -
--help -
--max_cluster_bias_DEL -
--max_cluster_bias_DUP -
--max_cluster_bias_INS -
--max_cluster_bias_INV -
--max_cluster_bias_TRA -
--max_size -
--max_split_parts -
--merge_del_threshold -
--merge_ins_threshold -
--min_mapq -
--min_read_len -
--min_siglength -
--min_size -
--min_support -
--report_readid -
--retain_work_dir -
--sample -
--threads -
--version -
-Ivcf -
-L -
-S -
-b -
-h -
-l -
-md -
-mi -
-p -
-q -
-r -
-s -
-sl -
-t -
-v