cutadapt(1) on Linux
The text 6dd908726a11, as Debian 13 (Trixie), Debian 12 (Bookworm), Debian 11 (Bullseye), Debian 10 (Buster), Debian 9 (Stretch) shipped it. The page shows this text now.
remove adapter sequences from high-throughput sequencing reads
Flags it lists
-
--adapter -
--anywhere -
--bwa -
--colorspace -
--cut -
--debug -
--discard -
--discard-trimmed -
--discard-untrimmed -
--double-encode -
--error-rate -
--format -
--front -
--help -
--info-file -
--interleaved -
--length-tag -
--maq -
--mask-adapter -
--match-read-wildcards -
--max-n -
--maximum-length -
--minimum-length -
--nextseq-trim -
--no-indels -
--no-match-adapter-wildcards -
--no-trim -
--no-zero-cap -
--output -
--overlap -
--pair-filter -
--paired-output -
--prefix -
--quality-base -
--quality-cutoff -
--quiet -
--rest-file -
--strip-f3 -
--strip-suffix -
--suffix -
--times -
--too-long-output -
--too-long-paired-output -
--too-short-output -
--too-short-paired-output -
--trim-n -
--trim-primer -
--trimmed-only -
--untrimmed-output -
--untrimmed-paired-output -
--version -
--wildcard-file -
--zero-cap -
-A -
-B -
-G -
-M -
-N -
-O -
-U -
-a -
-b -
-c -
-d -
-e -
-f -
-g -
-h -
-m -
-n -
-o -
-p -
-q -
-r -
-t -
-u -
-x -
-y -
-z