convert_vcf_to_features1

Usage:

convert_vcf_to_features -i INFILE -o OUTFILE

Description:

This script converts a VCF (Variant Call Format) file into a feature file (GFF). The resulting GFF file can be used by the CGview Comparison tool. Simply place the GFF file in the 'features' directory of a CCT project.

Required arguments:

-i, --input FILE

Input VCF file (tab deliminated).

-o, --output FILE

Name to call the output file.

Example:

convert_vcf_to_features -i input.vcf -o output.gff