/usr/share/coiledcoils/*.mat
matrix data files
coils-wrap1
Runs ncoils three times to give you a three-window output
Usage
coils-wrap [OPTION]
Overview
coils-wrap runs ncoils three times to give you a three-window output.
ncoils is a program that compares a sequence to a database of known parallel two-stranded coiled-coils and derives a similarity score. By comparing this score to the distribution of scores in globular and coiled-coil proteins, the program then calculates the probability that the sequence will adopt a coiled-coil conformation.
Options
-
-i -
input file in FASTA format
-
-o -
output file
-
-r -
raw output file, default: `<output file>_raw'
-
-m -
matrix type; set matrix (MTK or MTIDK)
-
-w -
weight a&d = b,c,e,f&g (boolean)
Examples
"coils-wrap -m MTIDK -i /usr/share/doc/ncoils/1srya.fa -o /tmp/coils.out -r /tmp/coils_raw.txt && less /tmp/coils.out /tmp/coils_raw.txt"
"ncoils -win 14 < /usr/share/doc/ncoils/1srya.fa"
Files
Copyright and license
GPL
Based on Lupas, Van Dyck & Stock (1991) Science 252,1162-1164
Releases
7 releases since Debian 7 (Wheezy); the text changed 5 times.