cnvkit-sex1
Guess samples' sex from the relative coverage of chromosomes x and y.
Overview
usage: cnvkit.py sex [-h] [-y] [-o FILENAME] filenames [filenames ...]
positional arguments:
- filenames
-
Copy number or copy ratio files (*.cnn, *.cnr).
options:
-
-h, --help -
show this help message and exit
-
-y, --male-reference, --haploid-x-reference -
Assume inputs were normalized to a male reference (i.e. female samples will have +1 log-coverage of chrX; otherwise male samples would have
-1chrX).
-
-o FILENAME, --output FILENAME -
Output table file name.
Releases
4 releases since Debian 10 (Buster); the text changed 3 times.