cnvkit-segment(1) on Linux
The text ff60da7a52bf, as Debian 10 (Buster) shipped it.
Infer copy number segments from the given coverage table.
Flags it lists
-
--dataframe -
--drop-low-coverage -
--drop-outliers -
--help -
--method -
--min-variant-depth -
--normal-id -
--output -
--processes -
--rscript-path -
--sample-id -
--threshold -
--vcf -
--zygosity-freq -
-d -
-h -
-i -
-m -
-n -
-o -
-p -
-t -
-v -
-z