cnvkit-import-seg1
Convert a seg file to cnvkit .cns files.
Overview
usage: cnvkit.py import-seg [-h] [-c CHROMOSOMES] [-p PREFIX] [--from-log10]
- [-d DIRECTORY]
-
segfile
positional arguments:
- segfile
-
Input file in SEG format. May contain multiple samples.
options:
-
-h, --help -
show this help message and exit
-
-c CHROMOSOMES, --chromosomes CHROMOSOMES -
Mapping of chromosome indexes to names. Syntax: "from1:to1,from2:to2". Or use "human" for the preset: "23:X,24:Y,25:M".
-
-p PREFIX, --prefix PREFIX -
Prefix to add to chromosome names (e.g 'chr' to rename '8' in the SEG file to 'chr8' in the output).
-
--from-log10 -
Convert base-10 logarithm values in the input to base-2 logs.
-
-d DIRECTORY, --output-dir DIRECTORY -
Output directory name.
Releases
4 releases since Debian 10 (Buster); the text changed 3 times.