cnvkit-call(1) on Linux
The text 60ef6311f361, as Debian 12 (Bookworm) shipped it.
Call copy number variants from segmented log2 ratios.
Flags it lists
-
--center -
--center-at -
--drop-low-coverage -
--filter -
--gender -
--haploid-x-reference -
--help -
--male-reference -
--method -
--min-variant-depth -
--normal-id -
--output -
--ploidy -
--purity -
--sample-id -
--sample-sex -
--thresholds -
--vcf -
--zygosity-freq -
-g -
-h -
-i -
-m -
-n -
-o -
-t -
-v -
-x -
-y -
-z