cnvkit-breaks1
List the targeted genes in which a copy number breakpoint occurs.
Overview
usage: cnvkit.py breaks [-h] [-m MIN_PROBES] [-o FILENAME] filename segment
positional arguments:
- filename
-
Processed sample coverage data file (*.cnr), the output of the 'fix' sub-command.
- segment
-
Segmentation calls (.cns), the output of the 'segment' command).
options:
-
-h, --help -
show this help message and exit
-
-m MIN_PROBES, --min-probes MIN_PROBES -
Minimum number of within-gene probes on both sides of a breakpoint to report it. [Default: 1]
-
-o FILENAME, --output FILENAME -
Output table file name.
Releases
4 releases since Debian 10 (Buster); the text changed 3 times.