cnvkit-batch(1) on Linux
The text a1a42c8ca8d5, as Debian 13 (Trixie) shipped it. The page shows this text now.
Run the complete CNVkit pipeline on one or more BAM files.
Flags it lists
-
--access -
--annotate -
--antitarget-avg-size -
--antitarget-min-size -
--antitargets -
--cluster -
--count-reads -
--diagram -
--drop-low-coverage -
--fasta -
--haploid-x-reference -
--help -
--male-reference -
--method -
--output-dir -
--output-reference -
--processes -
--reference -
--rscript-path -
--scatter -
--segment-method -
--seq-method -
--short-names -
--target-avg-size -
--targets -
-a -
-c -
-d -
-f -
-g -
-h -
-m -
-p -
-r -
-t -
-y