cnvkit-antitarget1
Derive off-target ("antitarget") bins from target regions.
Overview
usage: cnvkit.py antitarget [-h] [-g FILENAME] [-a AVG_SIZE] [-m MIN_SIZE]
- [-o FILENAME]
-
targets
positional arguments:
- targets
-
BED or interval file listing the targeted regions.
options:
-
-h, --help -
show this help message and exit
-
-g FILENAME, --access FILENAME -
Regions of accessible sequence on chromosomes (.bed), as output by genome2access.py.
-
-a AVG_SIZE, --avg-size AVG_SIZE -
Average size of antitarget bins (results are approximate). [Default: 150000]
-
-m MIN_SIZE, --min-size MIN_SIZE -
Minimum size of antitarget bins (smaller regions are dropped). [Default: 1/16 avg size, calculated]
-
-o FILENAME, --output FILENAME -
Output file name.
Releases
4 releases since Debian 10 (Buster); the text changed 3 times.