cmtk-reorient1
Reorientation
Usage
reorient [options]
new-orientation
infile
outfile
Overview
Convert between image orientations, i.e., physically re-order pixel array and adapt stored anatomical orientation information
Options
Global Toolkit Options (these are shared by all CMTK tools)
-
--help -
Write list of basic command line options to standard output.
-
--help-all -
Write complete list of basic and advanced command line options to standard output.
-
--wiki -
Write list of command line options to standard output in MediaWiki markup.
-
--man -
Write man page source in 'nroff' markup to standard output.
-
--version -
Write toolkit version to standard output.
-
--echo -
Write the current command line to standard output.
-
--verbose-level <integer> -
Set verbosity level.
-
--verbose, -v -
Increment verbosity level by 1 (deprecated; supported for backward compatibility).
-
--threads <integer> -
Set maximum number of parallel threads (for POSIX threads and OpenMP).
Main Options
-
--input-orientation <string>, -i <string> -
Override input orientation. This is a three-letter code, e.g., 'RAS', 'LPI', etc. [Default: NONE]
-
--output-orientation <string>, -o <string> -
Override output orientation. Default is 'RAS', or the closest match supported by the output image file format [Default: NONE]
-
--output-space <string> -
Override output coordinate space (e.g., 'RAS', 'LAS', 'LPS'). This does not affect the array order. Default is to write image in the input image space. [Default: NONE]
Acknowledgments
CMTK is developed with support from the NIAAA under Grant AA021697, National Consortium on Alcohol and Neurodevelopment in Adolescence (N-CANDA): Data Integration Component. From April 2009 through September 2011, CMTK development and maintenance was supported by the NIBIB under Grant EB008381.
Releases
7 releases since Debian 7 (Wheezy); the text changed 6 times.