cmtk-mat2dof1

Global Toolkit Options (these are shared by all CMTK tools)

--help

Write list of basic command line options to standard output.

--help-all

Write complete list of basic and advanced command line options to standard output.

--wiki

Write list of command line options to standard output in MediaWiki markup.

--man

Write man page source in 'nroff' markup to standard output.

--version

Write toolkit version to standard output.

--echo

Write the current command line to standard output.

--verbose-level <integer>

Set verbosity level.

--verbose, -v

Increment verbosity level by 1 (deprecated; supported for backward compatibility).

--threads <integer>

Set maximum number of parallel threads (for POSIX threads and OpenMP).

Input Options

--matrix3x3, -3

Only input upper left 3x3 submatrix.

--transpose, -t

Transpose input matrix.

--pixel-size <string>

For matrices in pixel space (i.e., mapping from grid index to physical coordinate), set image grid pixel size. [Default: NONE]

Transformation Modifiers

--center <string>

Set center x,y,z for rotation and scaling. [Default: NONE]

--offset <string>

Set offset dx,dy,dz for translation. [Default: NONE]

--xlate <string>

Translate result relative by given vector. [Default: NONE]

--inverse

Output inverse transformation. Inversion happens after all other modifiers have been applied.

Output Options

--output <string>, -o <string>

Write output transformation to this file [Default: NONE]

--list <string>

Write output in list format to this archive (directory including 'registration' and 'studylist' files). [Default: NONE]

--append

Append to output file rather than create a new one and overwrite exisiting files.