cmtk-levelset1
Levelset segmentation
Usage
levelset InputImage
OutputImage
Overview
Levelset-type segmentation of foreground/background using minimum regional variance energy
Options
Global Toolkit Options (these are shared by all CMTK tools)
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--help -
Write list of basic command line options to standard output.
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--help-all -
Write complete list of basic and advanced command line options to standard output.
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--wiki -
Write list of command line options to standard output in MediaWiki markup.
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--man -
Write man page source in 'nroff' markup to standard output.
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--xml -
Write command line syntax specification in XML markup (for Slicer integration).
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--version -
Write toolkit version to standard output.
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--echo -
Write the current command line to standard output.
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--verbose-level <integer> -
Set verbosity level.
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--verbose, -v -
Increment verbosity level by 1 (deprecated; supported for backward compatibility).
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--threads <integer> -
Set maximum number of parallel threads (for POSIX threads and OpenMP).
Main Options
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--binarize, -b -
Binarize levelset and write as byte mask, rather than write floating-point levelset function itself.
These parameters control the initialization of the levelset function
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--scale-initial-sphere <double> -
Scale factor to reduce or increase the size of the initial foreground region sphere. [Default: 1]
These parameters control the evolution of the levelset function
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--iterations <integer>, -n <integer> -
Maximum number of iterations [Default: 100]
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--force-iterations, -f -
Force given number of iterations, even when convergence has been detected
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--filter-sigma <double>, -s <double> -
Gaussian filter sigma in world coordinate units (e.g., mm) [Default: 2]
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--delta <double>, -d <double> -
Time constant for levelset evolution; must be > 0; larger is faster [Default: 0.1]
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--levelset-threshold <double>, -t <double> -
Levelset threshold: levelset function is truncated at +/- this value [Default: 1]
Image/Transformation Database
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--db <string> -
Path to image/transformation database that should be updated with the newly created image. [Default: NONE]
Acknowledgments
CMTK is developed with support from the NIAAA under Grant AA021697, National Consortium on Alcohol and Neurodevelopment in Adolescence (N-CANDA): Data Integration Component. From April 2009 through September 2011, CMTK development and maintenance was supported by the NIBIB under Grant EB008381.
Releases
7 releases since Debian 7 (Wheezy); the text changed 6 times.