cmalign(1) on Linux
The text f62b56811886, as Debian 12 (Bookworm), Debian 11 (Bullseye) shipped it.
align sequences to a covariance model
Flags it lists
-
--dnaout -
--ileaved -
--mapstr -
--matchonly -
--mpi -
--noprob -
--verbose -
-g -
-h