clearcut(1) on Linux
The text 52bb0b37a58c, as Debian 9 (Stretch), Debian 8 (Jessie) shipped it.
Relaxed Neighbor Joining
Flags it lists
-
--DNA -
--alignment -
--distance -
--expblen -
--expdist -
--help -
--jukes -
--kimura -
--neighbor -
--norandom -
--ntrees -
--protein -
--quiet -
--seed -
--shuffle -
--stdin -
--stdout -
--verbose -
--version -
-D -
-E -
-I -
-N -
-O -
-P -
-S -
-V -
-a -
-d -
-e -
-h -
-j -
-k -
-n -
-q -
-r -
-s -
-v