cirdna1e
Draws circular maps of dna constructs
Usage
cirdna -infile
infile
[-maxgroups
integer]
[-maxlabels
integer]
-ruler
boolean
-blocktype
list
[-originangle
float]
-posticks
selection
-posblocks
selection
[-intersymbol
boolean]
[-intercolour
integer]
[-interticks
boolean]
[-gapsize
integer]
[-ticklines
boolean]
[-textheight
float]
[-textlength
float]
[-tickheight
float]
[-blockheight
float]
[-rangeheight
float]
[-gapgroup
float]
[-postext
float]
-graphout
graph
cirdna -help
Overview
cirdna is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”). It is part of the "Display" command group(s).
Options
Input section
-
-infile infile -
Default value: inputfile
Additional section
-
-maxgroups integer -
Default value: 20
-
-maxlabels integer -
Default value: 10000
Output section
-
-ruler boolean -
Default value: Y
-
-blocktype list -
Default value: Filled
-
-originangle float -
Default value: 90
-
-posticks selection -
Default value: Out
-
-posblocks selection -
Default value: In
-
-intersymbol boolean -
Default value: Y
-
-intercolour integer -
Default value: 1
-
-interticks boolean -
Default value: N
-
-gapsize integer -
Default value: 500
-
-ticklines boolean -
Default value: N
-
-textheight float -
Height of text. Enter a number <1.0 or >1.0 to decrease or increase the size, respectively Default value: 1.0
-
-textlength float -
Length of text. Enter a number <1.0 or >1.0 to decrease or increase the size, respectively Default value: 1.0
-
-tickheight float -
Height of ticks. Enter a number <1.0 or >1.0 to decrease or increase the size, respectively Default value: 1.0
-
-blockheight float -
Height of blocks. Enter a number <1.0 or >1.0 to decrease or increase the size, respectively Default value: 1.0
-
-rangeheight float -
Height of range ends. Enter a number <1.0 or >1.0 to decrease or increase the size, respectively Default value: 1.0
-
-gapgroup float -
Space between groups. Enter a number <1.0 or >1.0 to decrease or increase the size, respectively Default value: 1.0
-
-postext float -
Space between text and ticks, blocks, and ranges. Enter a number <1.0 or >1.0 to decrease or increase the size, respectively Default value: 1.0
-
-graphout graph
Releases
9 releases since Debian 5.0 (Lenny); the text changed 2 times.