cdkdepict(1)

cdkdepict1

Draw svg image for smiles

Overview

Depict molecules given as SMILES strings in SVG, PDF PS (PostScript) or EPS (Encapsulated PS) formats.

USAGE

cdkdepict < input.smi cdkdepict inputs*.smi

Options:

-a, --auto-kekulise

Attempt to "kekulise" aromatic smiles, switch to non-kekulised representation if kekulisation fails (default)

-k, --kekulise

Always "kekulise" aromatic smiles

-k-, --dont-kekulise, --do-not-kekulise

Do not "kekulise" aromatic smiles, leave input as it is

--smiles c1ccccc1

Specify SMILES string to depict instead of reading input files

-S, --svg-output Produce SVG output

-E, --eps-output Produce EPS output

-P, --pdf-output Produce PDF output

--supported-formats

List formats supported for a given input

--version

Print program version and exit

--help

Print short help message (this message) and exit

Releases

2 releases since Debian 12 (Bookworm); the text changed 1 time.

  1. 12
  2. 13

From smiles-scripts 0.3.0+svn878+branch+system+deps-2 in Debian 13 (Trixie). Parsed by carta from the page's man source.