bwa(1) on Linux
The text 91eed549d0a2, as Debian 6.0 (Squeeze) shipped it.
Burrows-Wheeler Alignment Tool
Flags it lists
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-E -
-M -
-N -
-O -
-P -
-R -
-T -
-a -
-b -
-c -
-d -
-e -
-i -
-k -
-l -
-n -
-o -
-p -
-q -
-r -
-s -
-t -
-w -
-z