bp_run_neighbor.pl(1p)

bp_run_neighbor.pl1p

Run phylip's 'neighbor' program through bioperl

Usage

run_neighbor [-i inputfile] [-o outfilename]

Overview

Provide an matrix file to run neighbor on. File should be named of the forma file.matrix or file.protdist (the ending doesn't matter, but the program expects a file in the form of (\S+)\.(\S+).

This will run the application 'neighbor' to build a Neighbor-Joining tree from a protein distance matrix.

Releases

8 releases since Debian 6.0 (Squeeze); the text changed 7 times.

  1. 6.0
  2. 7
  3. 8
  4. 9
  5. 10
  6. 11
  7. 12
  8. 13

Author

Jason Stajich, jason-AT-open-bio-DOT-org

From bioperl-run 1.7.3-13 in Debian 13 (Trixie). Parsed by carta from the page's man source.