bp_process_sgd1p

Massage sgd annotation flat files into a version suitable for the generic genome browser

Usage

  % bp_process_sgd.pl chromosomal_features.tab > yeast.gff

Overview

This script massages the SGD sequence annotation flat files located at ftp://genome-ftp.stanford.edu/pub/yeast/data_dump/feature/chromosomal_features.tab into a version of the GFF format suitable for display by the generic genome browser.

To use this script, get the SGD chromosomal_features.tab file from the FTP site listed above, and run the following command:

  % bp_process_sgd.pl chromosomal_features.tab > yeast.gff

The yeast.gff file can then be loaded into a Bio::DB::GFF database using the following command:

  % bulk_load_gff.pl -d <databasename> yeast.gff

Releases

9 releases since Debian 5.0 (Lenny); the text changed 7 times.

5.0
6.0
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12–13